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Not AvailabSouthern Bluefin Tuna (SBT, Thunnus maccoyii) range broadly in rich feeding grounds of the Southern Hemisphere but spawn only in a small tropical region off northwestern Australia directly downstream of the Indonesian Throughflow. Here, we describe goals, physical context, design and major findings of an end-to-end process study conducted during the peak SBT spawning season (January–March 2022) to understand nutrient sources, productivity, pelagic food web structure and their relationships to larval SBT feeding, growth and survival. Mesoscale variability was investigated by continuous underway measurements of surface waters and station sampling along the cruise track. Biogeochemical and community relationships, process rates, and trophic interactions were determined in four multi-day Lagrangian experiments in the southern Argo Basin. The study revealed strong system balances among nitrogen fluxes, phytoplankton production, grazing processes, and export. Highly selective feeding on appendicularians allows efficient trophic transfer from picophytoplankton-dominated production to SBT larvae. Plankton productivity, phytoplankton carbon and zooplankton biomass were proportionately elevated compared to similar measurements from the Atlantic bluefin larval habitat in the Gulf of Mexico, but with less advective input from the coastal margins. Individual-based otolith and stable isotope analyses identify larvae of lower trophic position, narrow diet, and narrow maternal diet as the fastest growers most likely to contribute to stock recruitment. Our study highlights the importance of system-level studies to document and understand the subtleties of how food webs of oligotrophic regions respond to climate change, which may not be predictable from the acquired knowledge of historical studies.